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Series GSE116505 Query DataSets for GSE116505
Status Public on Jul 03, 2018
Title BAR-Seq to study history-dependent behavior
Organism Saccharomyces cerevisiae
Experiment type Other
Summary Sequencing of the barcodes of pooled yeast deletion collection in carbon source shifts to identify the genes affecting history dependent behavior.
 
Overall design The yeast deletion was pooled together and pregrown in maltose. They were washed and grown in glucose for different durations. They were washed back to maltose again. Samples were taken regularly and the barcodes were amplified and sequenced. on Illumina. Each deletion has two barcodes (Up and Down) around the deleted gene.
 
Contributor(s) Cerulus B, Jariani A
Citation(s) 30299256
Submission date Jul 02, 2018
Last update date Mar 13, 2019
Contact name Abbas Jariani
E-mail(s) jariani.abbas@gmail.com
Phone +3168
Organization name KU Leuven - VIB
Department KU Leuven - VIB Centre for Microbiology
Street address Gaston Geenslaan 1, box 2471
City Leuven
ZIP/Postal code 3001
Country Belgium
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (30)
GSM3241188 History-dependence BAR-Seq [1]
GSM3241189 History-dependence BAR-Seq [2]
GSM3241190 History-dependence BAR-Seq [3]
Relations
BioProject PRJNA478858
SRA SRP151756

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116505_BARseq_barcode_counts.csv.gz 393.0 Kb (ftp)(http) CSV
GSE116505_Readme_barcodePositions.pdf 102.3 Kb (ftp)(http) PDF
GSE116505_down-tag.fasta.gz 62.1 Kb (ftp)(http) FASTA
GSE116505_up-tag.fasta.gz 63.7 Kb (ftp)(http) FASTA
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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