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Series GSE117114 Query DataSets for GSE117114
Status Public on Jul 14, 2018
Title Phytochrome B-SPA-COP1 regulation of red light induced gene expressions in Arabidopsis thaliana
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary The mRNA expression profiles of the quadruple spa mutant spaQ and cop1-4 were analyzed in 1 hour red light treated condition. Under same condition, the gene expression changes in phyB-SPA1 interaction domain mutant was analyzed and compared with wild type.
Overall design Total fifteen 1h red light treated Arabidopsis samples were used. These include three replicates of following genotypes: Col-0, cop1-4, spaQ, phyB C-terminal deletion, phyB full length. Total six additional samples were used for dark control. These include three replicates of following genotypes: phyB C-terminal deletion, phyB full length.
Contributor(s) Paik I, Pham VN, Huq E
Citation(s) 31527679
Submission date Jul 13, 2018
Last update date Sep 23, 2019
Contact name Inyup Paik
Organization name UT Austin
Department Molecular Biosciences
Lab Enamul Huq lab
Street address NHB 2.616, Stop A5000 100 East 24th St.
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (21)
GSM3271472 Col-0 red rep1
GSM3271473 Col-0 red rep2
GSM3271474 Col-0 red rep3
BioProject PRJNA481068
SRA SRP153425

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Supplementary file Size Download File type/resource
GSE117114_Total_Count.txt.gz 894.2 Kb (ftp)(http) TXT
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