|
| Status |
Public on Jul 14, 2018 |
| Title |
Phytochrome B-SPA-COP1 regulation of red light induced gene expressions in Arabidopsis thaliana |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The mRNA expression profiles of the quadruple spa mutant spaQ and cop1-4 were analyzed in 1 hour red light treated condition. Under same condition, the gene expression changes in phyB-SPA1 interaction domain mutant was analyzed and compared with wild type.
|
| |
|
| Overall design |
Total fifteen 1h red light treated Arabidopsis samples were used. These include three replicates of following genotypes: Col-0, cop1-4, spaQ, phyB C-terminal deletion, phyB full length. Total six additional samples were used for dark control. These include three replicates of following genotypes: phyB C-terminal deletion, phyB full length.
|
| |
|
| Contributor(s) |
Paik I, Pham VN, Huq E |
| Citation(s) |
31527679 |
| |
| Submission date |
Jul 13, 2018 |
| Last update date |
Sep 23, 2019 |
| Contact name |
Inyup Paik |
| E-mail(s) |
inyuppaik@gmail.com
|
| Organization name |
UT Austin
|
| Department |
Molecular Biosciences
|
| Lab |
Enamul Huq lab
|
| Street address |
NHB 2.616, Stop A5000 100 East 24th St.
|
| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
|
| Samples (21)
|
|
| Relations |
| BioProject |
PRJNA481068 |
| SRA |
SRP153425 |
Less...
More...