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Series GSE117298 Query DataSets for GSE117298
Status Public on Dec 21, 2018
Title Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light [DPI]
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptome profiling (RNA-seq) of local and systemic leaves of Arabidopsis Col treated with 50 mM DPI and exposed to a local treatment of high light
 
Overall design To inhibit the propagation of the ROS wave from the local to the systemic leaf, a drop of 0.3% agarose-containing water or 50 mM DPI, was placed at the midpoint between the local and systemic leaves of 4– to 5-week-old Col-0 plants. Local tissue was then subjected to light stress for 8 min and both local and systemic leaves were used for RNA-Seq.
 
Contributor(s) Zandalinas SI, Sengupta S, Burks D, Azad RK, Mittler R
Citation(s) 30556340
Submission date Jul 18, 2018
Last update date Dec 21, 2018
Contact name Soham Sengupta
Organization name St. Jude Children's Research Hospital
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (24)
GSM3290655 Col_H2O_Control_Local Leaf_rep1
GSM3290656 Col_H2O_Control_Systemic Leaf_rep1
GSM3290657 Col_H2O_Highlight 8min_Local Leaf_rep1
This SubSeries is part of SuperSeries:
GSE117300 Identification and characterization of a core set of ROS wave-associated transcripts involved in the systemic acquired acclimation response of Arabidopsis to excess light
Relations
BioProject PRJNA481718
SRA SRP154323

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117298_normalized_counts_DPI.txt.gz 3.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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