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Series GSE117673 Query DataSets for GSE117673
Status Public on Jul 25, 2021
Title Network Landscape of Photothermal Flowering in Soybean.
Organisms Glycine max; Glycine soja
Experiment type Expression profiling by high throughput sequencing
Summary The project aims at elucidation of global gene expression patterns underlying photothermal flowering of soybean to clarify the molecular mechanisms of photothermal flowering in soybean.
Overall design RNA-sequencing was conducted using five soybean varieties under different photoperiod and ambient temperature conditions.
Contributor(s) Wu F, Kang X, Hajak B, Hanzawa Y
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Submission date Jul 25, 2018
Last update date Jul 25, 2021
Contact name Yoshie Hanzawa
Phone 8186774478
Organization name California State University, Northridge
Department Biology
Lab the Hanzawa lab
Street address 18111 Nordhoff Street, CR 5217
City Northridge
State/province California
ZIP/Postal code 91330
Country USA
Platforms (2)
GPL21998 Illumina HiSeq 4000 (Glycine max)
GPL25384 Illumina HiSeq 4000 (Glycine soja)
Samples (1003)
GSM3306035 YH01_0E4
GSM3306036 YH01_0E5
GSM3306037 YH01_1F6
BioProject PRJNA482870
SRA SRP155262

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117673_RNA-seq_data_analysis_protocol.ipynb.txt.gz 4.2 Kb (ftp)(http) TXT
GSE117673_design-1003.xlsx 58.5 Kb (ftp)(http) XLSX
GSE117673_expression-2017.csv.gz 332.8 Mb (ftp)(http) CSV
GSE117673_rna-seq-data-analysis.pdf 173.8 Kb (ftp)(http) PDF
GSE117673_star_counts.csv.gz 57.5 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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