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Series GSE11768 Query DataSets for GSE11768
Status Public on Dec 22, 2008
Title Nude mouse model of endometriosis
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by array
Summary The pathophysiology of endometriotic lesion development remains unclear but involves a complex interaction between ectopic endometrium and host peritoneal tissues. We hypothesised that disruption of this interaction was likely to suppress endometriotic lesion formation. We hoped to delineate the molecular and cellular dialogue between ectopic human endometrium and peritoneal tissues in nude mice, as a first step towards testing this hypothesis. Human endometrium was xenografted into nude mice and the resulting lesions were analysed using microarrays. A novel technique was developed that unambiguously determined whether RNA transcripts identified by the microarray analyses originated from human cells (endometrium) or mouse cells (stroma). Four key pathways (ubiquitin/proteosome, inflammation, tissue remodelling/repair and ras-mediated oncogenesis) were revealed, that demonstrated communication between host stromal cells and ectopic endometrium.

Morphometric analysis of nude mouse lesions confirmed that necrosis, inflammation, healing and repair and cell proliferation occurred during xenograft development. These processes were entirely consistent with the molecular networks revealed by the microarray data. The transcripts detected in the xenografts overlapped with transcripts differentially expressed in a comparison between paired eutopic and ectopic endometrium from human endometriotic patients.

For the first time components of the interaction between ectopic endometrium and peritoneal stromal tissues have been revealed in ectopic endometrial lesions. Targeted disruption of this dialogue is likely to disrupt endometriotic tissue formation and may prove to be an effective therapeutic strategy for endometriosis.

Keywords: time course, disease state analysis.
 
Overall design Xenografts of human endometrium in nude mice hybridised to both human and mouse specific genechips. 2 biological replicates, at 3 time points. Control human endometrium and mouse pertioneum were hybridised to both human and mouse genechips
 
Contributor(s) Charnock-Jones DS
Citation(s) 18688027
Submission date Jun 12, 2008
Last update date Dec 13, 2018
Contact name D. Stephen Charnock-Jones
E-mail(s) dscj1@cam.ac.uk
Organization name University of Cambridge
Department Obstetrics and Gynaecology
Street address The Rosie Hospital
City Cambridge
ZIP/Postal code CB2 0SW
Country United Kingdom
 
Platforms (2)
GPL81 [MG_U74Av2] Affymetrix Murine Genome U74A Version 2 Array
GPL8300 [HG_U95Av2] Affymetrix Human Genome U95 Version 2 Array
Samples (18)
GSM298019 mouse peritoneum time 0 mouse array replicate 1
GSM298020 mouse peritoneum time 0 human array replicate 1
GSM298021 human endometrium time 0 human array replicate 1
This SubSeries is part of SuperSeries:
GSE11769 Analysis of ectopic human endometrium and peritoneal tissues in nude mice
Relations
BioProject PRJNA109079

Human and mouse ortholog/homolog alignment header descriptions
ID_REF Human
ID_REF Mouse
MM
MonH
HHA0
HHB0
HMA0
HMB0
MA7
MB7
MA10
MB10
MA14
MB14
HA7
HB7
HA10
HB10
HA14
HB14

Data table
ID_REF Human ID_REF Mouse MM MonH HHA0 HHB0 HMA0 HMB0 MA7 MB7 MA10 MB10 MA14 MB14 HA7 HB7 HA10 HB10 HA14 HB14
40556_at 160896_at 7.51 6.31 7.75 7.72 6.26 6.3 9.24 8.69 8.4 8.32 9.16 8.92 7.14 7.2 6.92 7.18 7.36 7.5
31792_at 101393_at 7.39 6.27 6.77 7.91 6.38 6.24 8.55 8.21 8.25 7.78 8.12 8.08 7.26 7.4 6.63 7.04 7.08 7.39
368_at 95345_at 7.19 7.2 7.87 7.6 6.55 6.52 8.2 8.16 7.61 7.74 7.98 8.04 7.56 7.53 6.97 7.2 7.58 7.8
38401_s_at 160281_at 7.59 6.95 7.76 7.78 6.35 6.13 8.32 8.12 7.85 7.9 8.32 8.27 7.34 7.26 7.02 6.95 7.31 7.34
38078_at 95637_at 7.77 6.88 7.42 7.93 6.8 6.69 8.27 8.22 7.57 7.86 8.09 7.78 7.54 7.54 7.07 7.33 7.57 7.49
41193_at 93285_at 7.73 6.56 7.82 7.65 6.67 6.83 8.28 8.11 7.78 7.77 7.95 7.94 7.8 7.41 6.96 7.1 7.71 7.69
924_s_at 101101_at 7.62 7.22 8.55 9.36 6.59 6.65 8.22 8.14 7.83 7.72 8.02 8.06 8.58 8.63 7.97 8.36 8.72 8.98
581_at 162263_f_at 7.78 6.24 8.03 8.48 6.76 6.77 8.38 8.35 7.81 8.03 8.12 8.28 7.4 7.29 7.29 7.36 7.77 7.92
461_at 94282_at 7.6 6.37 7.68 8.09 6.59 6.7 8.29 8 7.81 7.87 7.93 7.99 7.12 7.27 6.82 7.1 7.31 7.4
41750_at 94209_g_at 7.71 6.57 9.07 9.07 6.82 6.77 8.5 8.42 7.98 8.16 8.21 8.12 8.1 8.18 7.46 8.19 8.13 8.58
41573_at 96192_at 7.67 6.36 8.15 8 7 7.18 8.35 8.31 8.05 7.91 8.22 8.24 7.42 7.28 6.99 7.27 7.64 7.96
41260_at 162424_f_at 7.25 6.93 7.77 7.84 6.37 6.33 8.32 8.08 8.09 8.06 8.15 8.34 7.15 7.16 7.04 6.79 7.23 7.32
41126_at 100943_at 7.5 7.1 8.47 8.02 7.08 6.9 8.17 8.09 7.47 7.67 7.94 7.89 7.7 7.6 7.26 7.2 7.87 7.64
40803_at 96271_at 7.53 6.36 9.05 9.33 6.35 6.48 8.73 8.58 8.18 8.3 8.68 8.53 8.73 8.74 7.92 8.35 8.69 9.25
40712_at 103024_at 7.42 6.96 7.78 7.94 7.34 7.38 8.69 8.2 7.57 7.81 7.76 7.9 7.78 7.74 7.3 7.3 7.93 7.83
40432_at 98931_at 7.45 7.46 8.9 9.53 6.3 6.25 8.57 8.15 8.18 8.08 8.3 8.29 8.55 8.96 8.14 8.82 8.79 9.36
40281_at 97543_at 7.49 7.47 10.77 10.67 6.06 6.03 9.05 8.72 8.23 8.31 8.62 8.6 9.65 9.89 9.4 9.91 10.04 10.29
40215_at 96623_at 7.27 6.73 9.05 8.48 6.11 6.05 9.03 8.8 8.1 8.18 8.67 8.6 8.49 8.42 8.06 8.43 8.57 9.01
40092_at 95573_at 7.77 7.03 8.11 8.42 7.41 7.43 8.27 8.06 7.83 7.91 8 8.18 7.77 7.75 7.34 7.39 7.94 7.95
39754_at 162218_f_at 7.86 6.55 7.96 7.64 7.49 7.45 8.34 8.29 7.92 8.14 8.1 8.33 7.97 7.71 7.29 8.04 8.17 8.75

Total number of rows: 5993

Table truncated, full table size 627 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11768_RAW.tar 49.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
Processed data are available on Series record

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