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Series GSE118607 Query DataSets for GSE118607
Status Public on Oct 11, 2018
Title Comprehensive analysis of chromatin signature and transcriptome in nephron progenitor cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Examination of 2 different histone modifications in 3 cell types, and RNA sequence of 2 cell types.
Overall design Examination of 2 different histone modifications in 3 cell types, and RNA sequence of 2 cell types.
Contributor(s) Nishikawa M, Yuri S, Yanagawa N
Citation(s) 30416088
Submission date Aug 15, 2018
Last update date Mar 21, 2019
Contact name Masaki Nishikawa
Organization name UCLA / VA
Lab Yanagawa
Street address 16111 Plummer st
City North Hills
State/province CA
ZIP/Postal code 91343
Country USA
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (11)
GSM3334215 MM_H3K4me3_ChIPSeq
GSM3334216 MM_H3K27me3_ChIPSeq
GSM3334217 MM_Input_DNA
BioProject PRJNA486187
SRA SRP158044

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118607_Cuffdiff_MM_UB_transcript_FPKM.tabular.txt.gz 3.7 Mb (ftp)(http) TXT
GSE118607_MACS_peak_annotation_CM.xlsx 9.4 Mb (ftp)(http) XLSX
GSE118607_MACS_peak_annotation_ES.xlsx 8.4 Mb (ftp)(http) XLSX
GSE118607_MACS_peak_annotation_UB.xlsx 9.9 Mb (ftp)(http) XLSX
GSE118607_RAW.tar 5.2 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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