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| Status |
Public on Aug 16, 2020 |
| Title |
RNA Sequencing with de novo assembly of earthworm transcriptome by the treatment of lindane with different exposure and aging duration. |
| Organism |
Eisenia fetida |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: We studied the potential effects of lindane aging in soil on model earthworm Eisenia fetida at the transcriptomic level.
Methods: transcriptomes of earthworms were generated by RNA sequencing using Illumina Hiseq Xten platform.
Results: There were 1325 DE unigenes in G2 (1074 up and 251 down), 784 DE unigenes in G3 (457 up and 327 down), 3658 DE unigenes in G4 (2294 up and 1364 down), and 1511 DE unigenes in G5 (929 up and 582 down) compared with G1. Except in G2, lindane exposure caused significant impacts on cholinergic and GABAergic synaptic transmission in earthworms in other groups. The metabolic processes of ACh were also altered. It was of note that the term positive regulation of locomotion (GO:0040017) in G5 could be regarded as the phenotype of the interaction of two NTs.
Conclusions: We found that aging of lindane prior to exposure promoted the disrupting effects of lindane on earthworm neurotransmission.
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| |
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| Overall design |
The effects of lindane on earthworm transcriptomes using different exposure and aging duration.
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| Contributor(s) |
Xu T, Miao J |
| Citation(s) |
32416373 |
| |
| Submission date |
Aug 17, 2018 |
| Last update date |
Nov 18, 2020 |
| Contact name |
Ting Xu |
| E-mail(s) |
412_xuting@tongji.edu.cn
|
| Organization name |
Tongji University
|
| Street address |
No. 1239 Road Siping
|
| City |
Shanghai |
| ZIP/Postal code |
200092 |
| Country |
China |
| |
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| Platforms (1) |
|
| Samples (15)
|
| GSM3336516 |
7 d exposure to lindane aging for 0 d [0d-28d-1] |
| GSM3336517 |
7 d exposure to lindane aging for 0 d [0d-28d-2] |
| GSM3336518 |
7 d exposure to lindane aging for 0 d [0d-28d-3] |
| GSM3336519 |
28 d exposure to lindane aging for 0 d [30d-7d-1] |
| GSM3336520 |
28 d exposure to lindane aging for 0 d [30d-7d-2] |
| GSM3336521 |
28 d exposure to lindane aging for 0 d [30d-7d-3] |
| GSM3336522 |
7 d exposure to lindane aging for 30 d [30d-28d-1] |
| GSM3336523 |
7 d exposure to lindane aging for 30 d [30d-28d-2] |
| GSM3336524 |
7 d exposure to lindane aging for 30 d [30d-28d-3] |
| GSM3336525 |
28 d exposure to lindane aging for 30 d [control-1] |
| GSM3336526 |
28 d exposure to lindane aging for 30 d [control-2] |
| GSM3336527 |
28 d exposure to lindane aging for 30 d [control-3] |
|
| Relations |
| BioProject |
PRJNA486446 |
| SRA |
SRP158189 |
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