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Series GSE118919 Query DataSets for GSE118919
Status Public on Jun 25, 2020
Title Transcriptome-wide analysis upon DCP1A knockout
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We analyzed the effect of DCP1A knockout on total RNA population in undifferentiated mouse embryonic stem cells
 
Overall design Two different DCP1A KO clones (C17 and J15) were compared to a parental cell line, independent biological replicates were performed for each cell line
 
Contributor(s) Aeby E, Lee H, Lee JT
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Submission date Aug 22, 2018
Last update date Jun 25, 2020
Contact name Eric Aeby
E-mail(s) aeby@molbio.mgh.harvard.edu
Organization name Howard Hughes Medical Institute, Massachusetts General HospitalMassachusetts General Hospital, Harvard Medical School
Department Department of Molecular Biology and Department of Genetics
Lab Lee Lab
Street address 185 Cambridge Street
City Boston
State/province Massachusetts
ZIP/Postal code 02114
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM3351268 DCP1A KO clone C17 (replicate 1) RNA-seq
GSM3351269 DCP1A KO clone C17 (replicate 2) RNA-seq
GSM3351270 DCP1A KO clone J15 (replicate 1) RNA-seq
This SubSeries is part of SuperSeries:
GSE118943 DCP1A knockout: transcriptome-wide characterization
Relations
BioProject PRJNA487346
SRA SRP158612

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118919_RNAseq-DCP1aKO1.c.bw 27.4 Mb (ftp)(http) BW
GSE118919_RNAseq-DCP1aKO1.w.bw 27.8 Mb (ftp)(http) BW
GSE118919_RNAseq-DCP1aKO2.c.bw 22.5 Mb (ftp)(http) BW
GSE118919_RNAseq-DCP1aKO2.w.bw 23.0 Mb (ftp)(http) BW
GSE118919_RNAseq-WT.c.bw 23.1 Mb (ftp)(http) BW
GSE118919_RNAseq-WT.w.bw 23.7 Mb (ftp)(http) BW
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Raw data are available in SRA
Processed data are available on Series record

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