|
| Status |
Public on Jun 25, 2020 |
| Title |
DCP1A knockout: transcriptome-wide characterization |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 22, 2018 |
| Last update date |
Jun 27, 2020 |
| Contact name |
Eric Aeby |
| E-mail(s) |
aeby@molbio.mgh.harvard.edu
|
| Organization name |
Howard Hughes Medical Institute, Massachusetts General HospitalMassachusetts General Hospital, Harvard Medical School
|
| Department |
Department of Molecular Biology and Department of Genetics
|
| Lab |
Lee Lab
|
| Street address |
185 Cambridge Street
|
| City |
Boston |
| State/province |
Massachusetts |
| ZIP/Postal code |
02114 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (18)
|
| GSM3351268 |
DCP1A KO clone C17 (replicate 1) RNA-seq |
| GSM3351269 |
DCP1A KO clone C17 (replicate 2) RNA-seq |
| GSM3351270 |
DCP1A KO clone J15 (replicate 1) RNA-seq |
| GSM3351271 |
DCP1A KO cloneJ15 (replicate 2) RNA-seq |
| GSM3351272 |
Parental cell line (replicate 1) RNA-seq |
| GSM3351273 |
Parental cell line (replicate 2) RNA-seq |
| GSM3351351 |
DCP1A KO clone C17 (replicate 1) PRO-seq |
| GSM3351352 |
DCP1A KO clone C17 (replicate 2) PRO-seq |
| GSM3351353 |
DCP1A KO clone J15 (replicate 1) PRO-seq |
| GSM3351354 |
DCP1A KO cloneJ15 (replicate 2) PRO-seq |
| GSM3351355 |
Parental cell line (replicate 1) PRO-seq |
| GSM3351356 |
Parental cell line (replicate 2) PRO-seq |
| GSM3528170 |
Tsix +/- day 0 (replicate 1) |
| GSM3528171 |
Tsix +/- day 0 (replicate 2) |
| GSM3528172 |
Tsix +/- differentiationday 3 (replicate 1) |
| GSM3528173 |
Tsix +/- differentiation day 3 (replicate 2) |
| GSM3528174 |
Tsix +/- differentiation day 7 (replicate 1) |
| GSM3528175 |
Tsix +/- differentiation day 7 (replicate 2) |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE118919 |
Transcriptome-wide analysis upon DCP1A knockout |
| GSE118930 |
Genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) upon DCP1A knockout |
| GSE124289 |
Genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) during female mouse ES differentiation |
|
| Relations |
| BioProject |
PRJNA487454 |
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