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Series GSE119940 Query DataSets for GSE119940
Status Public on Apr 16, 2019
Title Single-Cell Transcriptomics Identifies TOX as a Key Transcriptional Regulator of Progenitor-Like CD8 T Cells in Chronic Infection [single-cell RNA-seq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Stem-like CD8 T cells maintain long-term antiviral CD8 immunity during chronic infection, and share regulatory pathways with memory precursor effector cells generated after acute infection. However, it is unclear whether stem-like CD8 T cells require dist
 
Overall design Single-cell tcranscriptomic and epigentic analysis of antigen specific CD8 T cells after acute and chronic viral infeciton. Transcrptome analysis of TOX over expression in antigen specific CD8 T cells after chronic viral infection.
 
Contributor(s) Yao C, Sun HW, O'Shea JJ, Schwartzberg P, Wu TQ
Citation(s) 31209400
Submission date Sep 13, 2018
Last update date Jul 03, 2019
Contact name Tuoqi Wu
E-mail(s) tuoqiwu@gmail.com
Organization name National Institute of Allergy and Infectious Diseases
Street address 49 Convent Dr.
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL21493 Illumina HiSeq 3000 (Mus musculus)
Samples (10)
GSM3568585 scRNA_D4.5_P14_Arm_1
GSM3568586 scRNA_D4.5_P14_Cl13_1
GSM3568587 scRNA_D7_P14_Arm_1
This SubSeries is part of SuperSeries:
GSE119943 Single-Cell Transcriptomics Identifies TOX as a Key Transcriptional Regulator of Progenitor-Like CD8 T Cells in Chronic Infection
Relations
BioProject PRJNA490748
SRA SRP161709

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119940_RAW.tar 346.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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