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| Status |
Public on Dec 15, 2023 |
| Title |
Experimental promoter identification of a representative food-borne pathogen Salmonella enterica serovar Typhimurium LT2 with near single base-pair resolution (RNA-seq) |
| Organism |
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RpoD is a houskeeping sigma factor and RpoN is an alternative one. It was identified their intragenic and intergenic binding sites and association with the RNA polymerase.
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| Overall design |
The bacteria were grown up to mid-log phase, cultured in M9 minimal media with 0.2% glucose. The experiments were conducted in biological duplicate.
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| Contributor(s) |
Taizhanova A, Lee S, Gao Y, Park JY, Kim D |
| Citation(s) |
38239730 |
| |
| Submission date |
Sep 14, 2018 |
| Last update date |
Jan 29, 2024 |
| Contact name |
Donghyuk Kim |
| E-mail(s) |
dkim@unist.ac.kr
|
| Organization name |
UNIST
|
| Department |
Department of Chemical Engineering
|
| Lab |
Systems Biology Lab
|
| Street address |
50 UNIST-gil, Eonyang-eup, Ulju-gun
|
| City |
Ulsan |
| ZIP/Postal code |
44919 |
| Country |
South Korea |
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| Platforms (1) |
| GPL22503 |
Illumina HiSeq 2500 (Salmonella enterica subsp. enterica serovar Typhimurium str. LT2) |
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| Samples (2) |
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| This SubSeries is part of SuperSeries: |
| GSE119967 |
Experimental promoter identification of a representative food-borne pathogen Salmonella enterica serovar Typhimurium LT2 with near single base-pair resolution |
|
| Relations |
| BioProject |
PRJNA490869 |
| SRA |
SRP161766 |
