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| Status |
Public on Mar 31, 2022 |
| Title |
Next Generation Sequencing Facilitates Quantitative Analysis of Seed Development of Easy Dehulling Tartary Buckwheat Transcriptomes |
| Organism |
Fagopyrum tataricum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We generated 78.41 Gb of high-quality sequencing data (~8.71 Gb per sample) and catalogued the expression profiles of 9,765 annotated Tartary buckwheat genes in each sample. The analysis showed differences of transcriptomes during the development of easy dehulling buckwheat seed. We identified numerous differentially expressed genes that exhibited distinct expression patterns. These genes have known or potential roles in development of easy dehulling buckwheat seed. Therefore, we are appealing candidates for further investigation of the gene expression and associated regulatory mechanisms related to easy dehulling character.
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| Overall design |
buckwheat seeds mRNA profiles of the development were generated by deep sequencing, in triplicate, using Illumina HiSeq4000.
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| Contributor(s) |
Liu M |
| Citation missing |
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| |
| Submission date |
Nov 14, 2018 |
| Last update date |
Mar 31, 2022 |
| Contact name |
Moyang Liu |
| E-mail(s) |
cooljeep@sjtu.edu.cn
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| Organization name |
Shanghai Jiao Tong University
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| Department |
School of Agriculture and Biology
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| Street address |
dongchuan road 800
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| City |
Shanghai |
| ZIP/Postal code |
200240 |
| Country |
China |
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| Platforms (1) |
| GPL24740 |
Illumina HiSeq 4000 (Fagopyrum tataricum) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA505505 |
| SRA |
SRP168623 |
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