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Series GSE122727 Query DataSets for GSE122727
Status Public on Nov 01, 2021
Title H3K27ac and SMARCB1 binding in control and SMARCB1-knockdown cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This study delineated the downstream activity of oncogenic SMARCB1 and evaluated the genome-wide change of H3K27ac on chromatin.
 
Overall design global change of H3K27Ac in control and SMARCB1 knockdown liver cancer cell line (SK-Hep1)
 
Contributor(s) You JS, Hong SH, Son KH
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 19, 2018
Last update date Nov 03, 2021
Contact name Jueng Soo You
E-mail(s) CBnE01@gmail.com
Organization name Konkuk University
Street address 120 Neungdong-ro
City seoul
ZIP/Postal code 143-701
Country South Korea
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (4)
GSM3484229 ChIP_SMARCB1
GSM3484230 ChIP_H3K27ac_shCon
GSM3484231 ChIP_H3K27ac_shSMARCB1
Relations
BioProject PRJNA506104
SRA SRP169814

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122727_RAW.tar 1.0 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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