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Series GSE122990 Query DataSets for GSE122990
Status Public on Nov 28, 2018
Title Rna-seq transcriptome data for 12 week pancreatic islets from Neurod1 beta cell specific (Neurod1Floxed/Floxed; RipCre+) and control (Neurod1Floxed/Floxed) mice.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of this study was to identify genes regulated by Neurod1 in murine adult pancreatic islet beta cells.
 
Overall design Pancreatic islets were isolated from 12 week Neurod1Floxed/Floxed; RipCre+ and Neurod1Floxed/Floxed mice. Total Rna was extracted. Libraries of cDNA were sequenced and analyzed for RNA expression.
 
Contributor(s) Romer A, Sussel L
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Nov 27, 2018
Last update date Mar 19, 2019
Contact name Anthony Romer
Organization name Columbia University
Street address 1150 St. Nicholas Ave
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (6)
GSM3489954 ND-koARM4
GSM3489955 ND-koARM5
GSM3489956 ND-koARM6
This SubSeries is part of SuperSeries:
GSE123061 NEUROD1 dependent gene regulation in murine pancreatic endocrine cells and human stem cell derived insulin producing cells
Relations
BioProject PRJNA507182
SRA SRP170940

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122990_DEseq_ARC7-ARC10-ARC16_ARM4-ARM5-ARM6_DEG_list_1_.csv.gz 1.1 Mb (ftp)(http) CSV
GSE122990_RAW.tar 590.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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