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Series GSE12625 Query DataSets for GSE12625
Status Public on Sep 03, 2008
Title Expression data for a study on cross-species hybridization on single-species microarrays
Platform organism Xenopus laevis
Sample organisms Xenopus borealis; Xenopus laevis; Xenopus muelleri; Xenopus laevis x Xenopus borealis
Experiment type Expression profiling by array
Genome variation profiling by array
Summary Gene expression was examined in testis and brain tissue between two species (Xenopus laevis and Xenopus borealis) and their hybrid.

Genomic DNA hybridizations of the microarray target and non-target species were used to select probes that are unbiased between species.
Overall design Gene expression:
3 biological replicates were used for each tissue type.

Genomic hybridization:
We used the ratio of probe gDNA hybridization intensities between the target and non-target species to create a probemask for expression data from these species.
Genomic DNA was extracted from blood samples of several Xenopus individuals. Xenopus laevis individuals were lab bread, Xenopus borealis individuals were from Kenya, and Xenopus muelleri individuals were from Swaziland.
Contributor(s) Chain FJ, Ilieva D, Evans BJ, Kelley DB
Citation(s) 18815615
Submission date Aug 29, 2008
Last update date Sep 20, 2012
Contact name Frederic Chain
Organization name McMaster University
Department Biology
Lab LSB 324
Street address 1280 Main Street West
City Hamilton
State/province Ontario
ZIP/Postal code L8S4K1
Country Canada
Platforms (1)
GPL1318 [Xenopus_laevis] Affymetrix Xenopus laevis Genome Array
Samples (15)
GSM316001 F1 hybrid Testis, biological rep 3
GSM316180 F1 hybrid Testis, biological rep 2
GSM316181 F1 hybrid Testis, biological rep 1
BioProject PRJNA112793

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12625_RAW.tar 58.1 Mb (http)(custom) TAR (of CEL, TXT)
GSE12625_genomic_hyb_readme.txt 227 b (ftp)(http) TXT
Processed data included within Sample table

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