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Series GSE127574 Query DataSets for GSE127574
Status Public on Jan 08, 2020
Title Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Macrophomina phaseolina (Mp) is a soil-borne pathogenic fungus known to infect more than 500 plants species including important crops. Here we report the use of a novel agar plate-based pathosystem using the model plant Arabidopsis thaliana (Arabidopsis) to study plant defense reponses to Mp, specifically a comparison between wild type Col-0 and double mutant ein2/jar1 roots with and without Mp infection, at two time points, by RNA-seq.
 
Overall design Total mRNA expression profiling in Arabidopsis Col-0 and in ein2/jar1 roots, with and without Mp infection, at 24 hours or 48 hours post Mp contact, with two replicates respectively.
 
Contributor(s) Schroeder M, Tsuchiya T, Eulgem T
Citation(s) 31882671
Submission date Feb 28, 2019
Last update date Jan 08, 2020
Contact name Thomas Eulgem
E-mail(s) thomas.eulgem@ucr.edu
Organization name University of California, Riverside
Department Botany and Plant Sciences
Street address Genomics 3234A
City Riverside
State/province California
ZIP/Postal code 92521
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (16)
GSM3636157 Col-0_24h_rep 1
GSM3636158 Col-0_24h_rep 2
GSM3636159 Col-0_48h_rep 1
Relations
BioProject PRJNA524935
SRA SRP187156

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127574_MSMpproject.count.txt.gz 2.5 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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