GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE127574 Query DataSets for GSE127574
Status Public on Jan 08, 2020
Title Genome-wide profiling of Arabidopsis thaliana Col-0 and ein2/jar1 host responses to Macrophomina phaseolina infection
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Macrophomina phaseolina (Mp) is a soil-borne pathogenic fungus known to infect more than 500 plants species including important crops. Here we report the use of a novel agar plate-based pathosystem using the model plant Arabidopsis thaliana (Arabidopsis) to study plant defense reponses to Mp, specifically a comparison between wild type Col-0 and double mutant ein2/jar1 roots with and without Mp infection, at two time points, by RNA-seq.
Overall design Total mRNA expression profiling in Arabidopsis Col-0 and in ein2/jar1 roots, with and without Mp infection, at 24 hours or 48 hours post Mp contact, with two replicates respectively.
Contributor(s) Schroeder M, Tsuchiya T, Eulgem T
Citation(s) 31882671
Submission date Feb 28, 2019
Last update date Jan 08, 2020
Contact name Thomas Eulgem
Organization name University of California, Riverside
Department Botany and Plant Sciences
Street address Genomics 3234A
City Riverside
State/province California
ZIP/Postal code 92521
Country USA
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (16)
GSM3636157 Col-0_24h_rep 1
GSM3636158 Col-0_24h_rep 2
GSM3636159 Col-0_48h_rep 1
BioProject PRJNA524935
SRA SRP187156

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127574_MSMpproject.count.txt.gz 2.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap