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Series GSE127972 Query DataSets for GSE127972
Status Public on Jun 19, 2019
Title The polyadenylation factor FIP1 is important for plant development and root responses to abiotic stresses
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We have analyzed the poly(A) usage between Arabidopsis control and fip1-2 mutant seedlings grown in normal medium. FIP1 is a subunit of the polyadenalation machinary and loss of function of FIP1 affects plant development and response to salt, ABA and cadmium.
Overall design Random sequencing of Poly(A) tag (PAT-seq) from Arabidopsis thaliana wild type and fip1-2 plants. Demultiplex trimmed reads.
Contributor(s) del Pozo JC
Citation(s) 31111599
Submission date Mar 06, 2019
Last update date Jun 20, 2019
Contact name Juan Carlos del Pozo
Organization name Centro de Biotecnología y Genómica de Plantas
Department Biotechnology
Lab 180
Street address Campus de Montegancedo, UPM
City Pozuelo de Alracon
State/province Madrid
ZIP/Postal code 28223
Country Spain
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (4)
GSM3659325 control replica 1
GSM3659326 control replica 2
GSM3659327 fip1-2 replica 1
BioProject PRJNA525889
SRA SRP187778

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE127972_Normalized_counts_file_fip1-2_control.txt.gz 642.9 Kb (ftp)(http) TXT
GSE127972_report_F14FTSEUHT0797.pdf 3.1 Mb (ftp)(http) PDF
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Raw data are available in SRA
Processed data are available on Series record

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