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Series GSE12929 Query DataSets for GSE12929
Status Public on Mar 24, 2009
Title PPARg dependent expression changes during differentiation of 3T3L1 cell into adipocytes
Organism Mus musculus
Experiment type Expression profiling by array
Summary We profiled PPARg dependent gene expression changes during differntiation of 3T3L1 cell using PPARg siRNA
3T3-L1 (Pre-adipocyte) cell line was induced to differentiate using standard adipocyte differentiation media (IBMX, Dex and Insulin) 48hrs post-confluency. RNA was harvested at day -2 (confluent fibroblasts), 48hrs post-induction with IBMX, DEX and Insulin (day=0) and for each subsequent day after rosiglitazone treatment. Illumina beadchip microarrays were used to determine expression profiles of genes differentially regulated in cells transfected with either siRNA targeting PPARgamma or a non-targeting control siRNA.
 
Overall design 3T3L1 cell were induced to differentiate into adipocytes using IBMX, DEX and Insulin. RNA from cell treated with PPARg-specific siRNA and non-specific siRNA was isolated at different timepoints. Illumina MouseRef-8 v1.1 Bead chips were used for expression profiling
 
Contributor(s) Hamza MS, Pott S, Vega VB, Thomsen JS, Kandhadayar GS, Chiu KP, Wei CL, Ruan Y, Liu ET
Citation(s) 19300518
Submission date Sep 25, 2008
Last update date Jan 18, 2013
Contact name Vinsensius B Vega
E-mail(s) vegav@gis.a-star.edu.sg
Organization name Genome Institute of Singapore
Street address 60 Biopolis Street
City Singapore
ZIP/Postal code 138672
Country Singapore
 
Platforms (1)
GPL6103 Illumina mouseRef-8 v1.1 expression beadchip
Samples (48)
GSM324286 day-2_siRNA_neg_rep1
GSM324287 day-2_siRNA_neg_rep2
GSM324288 day-2_siRNA_neg_rep3
Relations
BioProject PRJNA110849

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12929_RAW.tar 3.4 Mb (http)(custom) TAR
GSE12929_rawdata.txt 47.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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