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Series GSE129956 Query DataSets for GSE129956
Status Public on Apr 22, 2019
Title Functional genomics of iMEF SDHC-loss stable line
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation missing Has this study been published? Please login to update or notify GEO.
NIH grant(s)
Grant ID Grant title Affiliation Name
F30 CA220660 Understanding succinate-induced global transcriptional and epigenetic reprogramming and identifying unique vulnerabilities intrinsic to SDH-deficient cells MAYO CLINIC John Andrew Smestad
R01 CA166025 Molecular Basis of Familial Paraganglioma MAYO CLINIC LOUIS JAMES MAHER
Submission date Apr 17, 2019
Last update date Jul 25, 2021
Contact name John Andrew Smestad
Organization name Mayo Clinic
Department Biochemistry and Molecular Biology
Lab Louis (Jim) Maher
Street address 200 1st St. SW
City Rochester
State/province Minnesota
ZIP/Postal code 55905
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (68)
GSM2796041 exp_input_rep_1
GSM2796042 exp_input_rep_2
GSM2796043 exp_succinyllysine_rep_1
This SuperSeries is composed of the following SubSeries:
GSE104362 iMEF SDHC-loss ChIP-seq
GSE114244 iMEF SDHC-loss stable line RNA-seq
GSE129953 iMEF SDHC-loss stable line ATAC-seq
Relations
BioProject PRJNA533316

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129956_RAW.tar 20.5 Gb (http)(custom) TAR (of BEDGRAPH, CSV, HIC)
SRA Run SelectorHelp

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