|
| Status |
Public on Jan 27, 2011 |
| Title |
Comparative transcriptomic analysis of BA- or BL- associated murine colonic epithelium |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
A huge number of microorganisms are colonized in human gut and the balance of their composition is closely related to human health. Recently, many probiotics such as bifidobacteria or lactobacilli have been introduced in our life as effective agents. However, we have not well understood their beneficial mechanisms including host-bacterial crosstalk To analyze the differences of gene expression between BA- or BL-associated murine colonic epithelium, we performed comparative transcriptomic analysis.
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| Overall design |
Bifidobacterium adolescentis (BA)-associated mice and Bifidobacterium longum (BL)-associated mice were used. Colonic epithelium was isolated and gene expression profile was analyzed.
Each 3 samples were analyzed.
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| Contributor(s) |
Fukuda S, Itoh K, Ohno H |
| Citation(s) |
21270894 |
| |
| Submission date |
Oct 01, 2008 |
| Last update date |
Feb 11, 2019 |
| Contact name |
Shinji Fukuda |
| E-mail(s) |
sfukuda@sfc.keio.ac.jp
|
| Organization name |
Keio University
|
| Department |
Institute for Advanced Biosciences
|
| Lab |
Microbiome Research Group
|
| Street address |
246-2 Mizukami, Kakuganji
|
| City |
Tsuruoka |
| State/province |
Yamagata |
| ZIP/Postal code |
997-0052 |
| Country |
Japan |
| |
|
| Platforms (1) |
| GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
|
| Samples (6)
|
| GSM325767 |
colonic epithelium_BA-infection_day7_rep1 |
| GSM325768 |
colonic epithelium_BA-infection_day7_rep2 |
| GSM325769 |
colonic epithelium_BA-infection_day7_rep3 |
| GSM325770 |
colonic epithelium_BL-infection_day7_rep1 |
| GSM325771 |
colonic epithelium_BL-infection_day7_rep2 |
| GSM325772 |
colonic epithelium_BL-infection_day7_rep3 |
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| This SubSeries is part of SuperSeries: |
| GSE13061 |
Comparative transcriptomic analysis of BA- or BL- |
|
| Relations |
| BioProject |
PRJNA114251 |
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