|
| Status |
Public on May 31, 2019 |
| Title |
C. elegans KLF-1 promoter binding sites |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Here we report CHIP-Seq DATA on KLF-1 pulldown in C. elegans N2 wild type and isp-1(qm150);ctb-1(qm189) mutant strain.
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| |
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| Overall design |
KLF-1-YFP was expressed under gut-specific vha-6 promoter in the N2 and isp-1(qm150);ctb-1(qm189) animals. The worms were collected at the first day of adulthood and the CHIP-seq experiment was performed using GFP-TRAP (Chromotek).
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| |
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| Contributor(s) |
Herholz M, Wagle P, Trifunovic A |
| Citation(s) |
31346165 |
| |
| Submission date |
Apr 18, 2019 |
| Last update date |
Aug 06, 2019 |
| Contact name |
Aleksandra Trifunovic |
| E-mail(s) |
aleksandra.trifunovic@uk-koeln.de
|
| Organization name |
Cluster of Excellence in Cellular Stress Responses in Aging-Associated Diseases
|
| Lab |
AG Trifunovic
|
| Street address |
Joseph-Stelzmann-Str. 26
|
| City |
Cologne |
| ZIP/Postal code |
50931 |
| Country |
Germany |
| |
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| Platforms (1) |
| GPL22765 |
Illumina HiSeq 4000 (Caenorhabditis elegans) |
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| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA533621 |
| SRA |
SRP193004 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE130035_4081_1_INPUT_4081_1.xlsx |
86.7 Kb |
(ftp)(http) |
XLSX |
| GSE130035_4081_2_INPUT_4081_2.xlsx |
99.0 Kb |
(ftp)(http) |
XLSX |
| GSE130035_4081_3_INPUT_4081_3.xlsx |
46.1 Kb |
(ftp)(http) |
XLSX |
| GSE130035_4082_1_INPUT_4082_1.xlsx |
162.3 Kb |
(ftp)(http) |
XLSX |
| GSE130035_4082_2_INPUT_4082_2.xlsx |
74.6 Kb |
(ftp)(http) |
XLSX |
| GSE130035_4082_3_INPUT_4082_3.xlsx |
114.9 Kb |
(ftp)(http) |
XLSX |
| GSE130035_Differential_Binding_4082_vs_4081.xlsx |
41.0 Kb |
(ftp)(http) |
XLSX |
| GSE130035_RAW.tar |
5.8 Gb |
(http)(custom) |
TAR (of BIGBED, BIGWIG) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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