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Series GSE13042 Query DataSets for GSE13042
Status Public on Nov 07, 2008
Title Effect of P. gingivalis on human primary gingival epithelial cells
Organism Homo sapiens
Experiment type Non-coding RNA profiling by array
Summary EXPERIMENT: Microarray expression profiles derived from the human primary gingival epithelial cells 24.0h after exposure to heat inactivated P. gingivalis
ANIMAL MODEL: NON
EXPOSURE: Human primary gingival epithelial cells (at 3rd passage) were exposed to heat inactivated P. gingivalis (MOI:100) at 90% confluence. Two types of gingival epithelial cells were used. One with Normal cytokine inducer type (at least 2 fold IL-6/TNF-alpha/IL-1ß when challenged with TLR2/4 agonists) and the other with diminished cytokine inducer type (no change in IL-6/TNF-alpha/IL-1ß when challenged with TLR2/4 agonists).
INTERVAL: NON.
PLATFORM: microRNA expression profile in gingival epithelial cells - miRCURY LNA™ microRNA Arrays (Exiqon). The RNA samples were subjected to microarray on 8/9/2007
Keywords = Human primary gingival epithelial cells
Keywords = P. gingivalis
Keywords = Periodontitis

Keywords: Ordered
 
Overall design The effect of heat inactivated P. gingivalison human primary gingival epithelial cells were assayed.
 
Contributor(s) Kinane DF, Benakanakere MR, Singh AV
Citation(s) 19509287
Submission date Oct 03, 2008
Last update date Mar 20, 2012
Contact name Amar Singh
E-mail(s) singhamarv@gmail.com
URL http://research.louisville.edu/oralhealth/kinane
Organization name University of Louisville
Department Oral Health and Systemic Disease Research Group
Lab Oral Health and Systemic Disease Research Group
Street address 501 S Preston street
City Louisville
State/province KY
ZIP/Postal code 40202
Country USA
 
Platforms (1)
GPL7423 Exiqon miRCURYTM LNA Array Version 8.1
Samples (4)
GSM326929 E28 Control vs Pooled sample
GSM326930 E28-P.gingivalis vs Pooled sample
GSM326931 E9 Control vs Pooled sample
Relations
BioProject PRJNA109951

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13042_RAW.tar 4.6 Mb (http)(custom) TAR (of TXT)
GSE13042_legends_for_raw_files.pdf 65.9 Kb (ftp)(http) PDF
Processed data included within Sample table

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