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Series GSE130606 Query DataSets for GSE130606
Status Public on May 30, 2019
Title Single cell RNA-Seq of sorted nephron progenitor cells from pooled mouse kidneys
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Kidneys from multiple litters of Six2GFP+ E14.5 mouse embryos were pooled into three replicate tubes and dissociated in parallel. Six2GFP+ cells were isolated and processed for single cell sequencing using 10x Genomics technology. This resulted in a dataset of 7844 single cells representing the nephron progenitor population of the mouse kidney.
 
Overall design High resolution single cell analysis of the nephron progenitor population in Six2GFP+ mice.
 
Contributor(s) Phipson B, Combes AN
Citation(s) 31118232
Submission date May 02, 2019
Last update date Aug 29, 2019
Contact name Belinda Phipson
Organization name WEHI
Department Bioinformatics
Lab Phipson
Street address 1G Royal Parade
City Parkville
State/province VIC
ZIP/Postal code 3052
Country Australia
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (3)
GSM3744731 Six2a
GSM3744732 Six2b
GSM3744733 Six2c
Relations
BioProject PRJNA540758
SRA SRP194507

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE130606_barcodes.tsv.gz 33.7 Kb (ftp)(http) TSV
GSE130606_counts.csv.gz 26.1 Mb (ftp)(http) CSV
GSE130606_genes.tsv.gz 212.5 Kb (ftp)(http) TSV
GSE130606_matrix.mtx.gz 93.4 Mb (ftp)(http) MTX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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