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Series GSE131096 Query DataSets for GSE131096
Status Public on Nov 15, 2019
Title Role of cis-zeatin in root responses to phosphate starvation
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary In this work we show that root illumination influences Pi starvation responses, enhancing the root and shoot growth arrest and limiting the root/shoot ratio as well as root hair elongation. A comparative transcriptomic study using dark-grown roots (DGR) roots seedlings taht were grown with or without phosphate identifies several genes that respond to Pi deficiency that were not previously reported, likely by the negative effect of the root illumination.
Overall design Random sequencing of poly A RNA from Arabidopsis thaliana wild type roots grown for 8 days in a medium 1/2MS with (+Pi 625 µM) or without (5 µM) of phosphate.
Web link
Contributor(s) del Pozo JC
Citation(s) 31230346
Submission date May 13, 2019
Last update date Nov 15, 2019
Contact name Juan Carlos del Pozo
Organization name Centro de Biotecnología y Genómica de Plantas
Department Biotechnology
Lab 180
Street address Campus de Montegancedo, UPM
City Pozuelo de Alracon
State/province Madrid
ZIP/Postal code 28223
Country Spain
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (4)
GSM3763385 1_+Pi_R1
GSM3763386 5_+Pi_R2
GSM3763387 7_5Pi_R1
BioProject PRJNA542647
SRA SRP198249

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Supplementary file Size Download File type/resource
GSE131096_Dark_grown_roots_Pi_deficiency_normalized_counts.txt.gz 244.4 Kb (ftp)(http) TXT
GSE131096_Quality_report.pdf 75.2 Kb (ftp)(http) PDF
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