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Series GSE131432 Query DataSets for GSE131432
Status Public on Jun 30, 2023
Title Single-cell RNA-sequencing of mouse colonic monocytes and macrophages
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We performed a single-cell transcriptome analysis of colon monocytes and macrophages in 2 control mice and 2 mice orally treated with diesel exhaust particles.
 
Overall design Lamina propria cells positive for Cd11b and positive for Ly6c2 or Cd64 were sorted for each replicate mouse, and used for single cell RNA Seq (10x genomics platform)
 
Contributor(s) Bosch A, Cavelti C, Roux J
Citation(s) 37400850
Submission date May 17, 2019
Last update date Sep 29, 2023
Contact name DBM Bioinformatics Core Facility
Phone +41612073541
Organization name University of Basel
Department Departement of Biomedicine
Street address Hebelstrasse 20
City Basel
State/province BS
ZIP/Postal code 4053
Country Switzerland
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (4)
GSM3780102 DEP_11
GSM3780103 DEP_13
GSM3780104 PBS_2
Relations
BioProject PRJNA543535
SRA SRP198811

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE131432_UMIsMatrix.txt.gz 10.8 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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