|
| Status |
Public on Dec 31, 2019 |
| Title |
A systematic dissection of whole transcriptome profiling in the APP/PS1 mouse brain |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
This study is the first to provide a systematic dissection of whole transcriptome profiling in the APP/PS1 mouse brain. The identified ceRNA networks may provide insight into the diagnosis and therapy of AD in the future.
|
| |
|
| Overall design |
we used deep RNA sequencing (RNA-seq) to examine whole transcriptome profiling in the brain of APP/PS1 mice (which express APP695swe and PS1-dE9 mutations) and wild-type control mice at the 6-month-old and 9-month-old stage.
|
| |
|
| Contributor(s) |
Wan J, Ma N |
| Citation(s) |
31786335, 32035423 |
| |
| Submission date |
Jun 04, 2019 |
| Last update date |
Mar 09, 2020 |
| Contact name |
MA NA NA |
| E-mail(s) |
15176888063@163.com
|
| Organization name |
peking university
|
| Street address |
haidian
|
| City |
BEIJING |
| ZIP/Postal code |
100000 |
| Country |
China |
| |
|
| Platforms (2) |
|
| Samples (36)
|
|
| Relations |
| BioProject |
PRJNA546262 |
| SRA |
SRP200404 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE132177_circRNA.methods.pdf |
393.2 Kb |
(ftp)(http) |
PDF |
| GSE132177_circRNA.software.pdf |
60.1 Kb |
(ftp)(http) |
PDF |
| GSE132177_circRNA_Readcount_TPM.txt.gz |
751.0 Kb |
(ftp)(http) |
TXT |
| GSE132177_lncRNA-mRNA.software.pdf |
170.7 Kb |
(ftp)(http) |
PDF |
| GSE132177_lncRNA-mRNA_methods.pdf |
318.3 Kb |
(ftp)(http) |
PDF |
| GSE132177_lncRNA_Readcount_FPKM.txt.gz |
154.8 Kb |
(ftp)(http) |
TXT |
| GSE132177_mRNA_FPKM.txt.gz |
2.4 Mb |
(ftp)(http) |
TXT |
| GSE132177_miRNA_Readcount_TPM.txt.gz |
84.4 Kb |
(ftp)(http) |
TXT |
| GSE132177_small_RNA.methods.pdf |
460.4 Kb |
(ftp)(http) |
PDF |
| GSE132177_small_RNA.software.pdf |
341.6 Kb |
(ftp)(http) |
PDF |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
Less...
More...