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| Status |
Public on Mar 31, 2020 |
| Title |
Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to soil media |
| Organism |
Salmonella enterica |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Summary: Salmonella enterica serovar Typhimurium strain 14028s transcriptome response to DS soil suspension (DS) and suspension of autoclaved DS soil (DA) compared to minimal medium (MM).
Purpose: Salmonella mRNA profile, when grown in different media was compared to minimal medium to reveal environment specific transcriptional changes.
Methods: mRNA profiles were generated using Illumina HiSeq in triplicates. The sequences were analysed using Bowtie2 followed by Cufflinks.
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| Overall design |
mRNA profiles of Salmonella were generated using Illumina HiSeq in triplicates.
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| Contributor(s) |
Schierstaedt J, Jechalke S, Neuhaus K, Schikora A |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 12, 2019 |
| Last update date |
May 10, 2022 |
| Contact name |
Jasper Schierstaedt |
| E-mail(s) |
jasper.schierstaedt@julius-kuehn.de
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| Organization name |
Julius kühn-Institute
|
| Department |
EP
|
| Street address |
Messeweg 11-12
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| City |
Braunschweig |
| ZIP/Postal code |
38104 |
| Country |
Germany |
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| Platforms (1) |
| GPL19226 |
Illumina HiSeq 2000 (Salmonella enterica) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA548577 |
| SRA |
SRP201257 |
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