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Series GSE132944 Query DataSets for GSE132944
Status Public on Dec 04, 2020
Title Regulation of plant DNA methylation by UV-B light in Arabidopsis
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This study investigated the effect of UV-B treatment on DNA methylation in A. thaliana.
 
Overall design A. thaliana plants were growth on 1/2X MS agar (0.7%) + 1% sucrose throughout treatment. Treatment began on Day 1 after sowing with 1.5 mE of UV-B (315 nm) and 60 mE white light and terminated on Day 10 of treatment when the plants were frozen in liquid nitrogen before mRNA or DNA extraction for sequencing.
 
Contributor(s) Zhong X, Jiang J, Liu J, Sanders D
Citation(s) 33495557
Submission date Jun 18, 2019
Last update date Mar 02, 2021
Contact name Xuehua Zhong
E-mail(s) xuehuazhong@wustl.edu
Phone 314-935-6084
Organization name Washington University in St. Louis
Department Biology
Street address One Brookings Drive
City St Louis
State/province MO
ZIP/Postal code 63130
Country USA
 
Platforms (2)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
GPL21785 Illumina HiSeq 4000 (Arabidopsis thaliana)
Samples (16)
GSM4955642 RNA_seq_Col-UV-1
GSM4955643 RNA_seq_Col-UV-2
GSM4955644 RNA_seq_ColwUV-1
Relations
BioProject PRJNA549508
SRA SRP201798

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE132944_RAW.tar 887.4 Mb (http)(custom) TAR (of BW)
GSE132944_UV_treatment_differential_gene_expression.xlsx 10.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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