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Series GSE133182 Query DataSets for GSE133182
Status Public on Jun 22, 2022
Title SME1 deficiency results in oxidative stress tolerance
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary In this work, we describe a nonsense mutation in SME1 that alleviates photorespiratory cell death in the Arabidopsis thaliana cat2-2 mutant. A SME1 loss-of-function mutant (sme1-1) and wild-type Col-0 were subjected to mRNA-seq for differential gene expression and alternative splicing analysis. This revealed a massive transcript reprogramming and occurrence of splicing defects caused by SME1 deficiency. For more details see the publication.
Overall design 2 genotypes: sme1-1 and wild-type Col-0 X 3 replicates = 6 samples
Contributor(s) Van der Kelen K, Van Ruyskensvelde V, Willems P, Van Breusegem F
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Submission date Jun 22, 2019
Last update date Jun 22, 2022
Contact name Patrick Willems
Organization name Ghent University
Department PSB
Street address Technologiepark 927
City Gent
ZIP/Postal code 9052
Country Belgium
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (6)
GSM3901502 KO-T-1
GSM3901503 KO-T-2
GSM3901504 KO-T-3
BioProject PRJNA550206
SRA SRP211749

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133182_kallisto_expression_matrix_genes.txt.gz 775.5 Kb (ftp)(http) TXT
GSE133182_kallisto_expression_matrix_transcripts.txt.gz 1.5 Mb (ftp)(http) TXT
GSE133182_scallop_filtered.sorted.gtf.gz 5.6 Mb (ftp)(http) GTF
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Processed data are available on Series record

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