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Series GSE133228 Query DataSets for GSE133228
Status Public on Apr 29, 2021
Title STAG2 promotes CTCF-anchored loop extrusion and cis-promoter and -enhancer interactions
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Expression profiling by array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 33930311
Submission date Jun 24, 2019
Last update date Jul 29, 2021
Contact name Olivier Delattre
Organization name Institut Curie
Department U830
Lab Olivier Delattre
Street address 26 rue d'ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platforms (3)
GPL16311 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG 14.0.0]
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (336)
GSM3897548 A673_SA1m#1 rep1
GSM3897549 A673_SA1m#1 rep2
GSM3897550 A673_SA1m#1 rep3
This SuperSeries is composed of the following SubSeries:
GSE132966 RNA-seq data in A673 & TC71 Ewing cell lines (STAG1 and STAG2 knock-out and proficient models and silenced for EWS-FLI1)
GSE133154 ChIP-seq data in A673 & TC71 Ewing cell lines (STAG1 and STAG2 knock-out)
GSE133227 HiChIP data in A673 & TC71 Ewing cell lines (STAG1 and STAG2 knock-out)
Relations
BioProject PRJNA550416

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE133228_RAW.tar 6.4 Gb (http)(custom) TAR (of BED, CEL, MATRIX, TAB)
SRA Run SelectorHelp
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