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Series GSE13464 Query DataSets for GSE13464
Status Public on Nov 05, 2008
Title ChIP-chip from Ehrlichia chaffeensis-infected THP-1 cells with ankyrin repeat-containing protein, p200
Organism Homo sapiens
Experiment type Genome variation profiling by array
Summary Host genes interacting with ankyrin repeat-containing protein, p200, in Ehrlichia chaffeensis-infected monocytes.
Chromatin immunoprecipitation (ChIP) together with microarray (chip) analysis demonstrated enrichment of relatively small subset (n=456) of host cell genes associated with molecular and biological processes, many of which are known to be altered during ehrlichial infection.

Keywords: ChIP-chip
 
Overall design Detection of genes with high signal enrichment by comparing the ratios of p200/input
 
Contributor(s) McBride JW, Zhu B
Citation(s) 19651857
Submission date Nov 04, 2008
Last update date Mar 20, 2012
Contact name Bing Zhu
E-mail(s) bizhu@utmb.edu
Phone 409-747-2005
Organization name utmb
Street address 301 University Boulevard
City Galveston
State/province TX
ZIP/Postal code 77550
Country USA
 
Platforms (2)
GPL6325 NimbleGen Homo sapiens HG18 promoter 1 of 2
GPL6326 NimbleGen Homo sapiens HG18 promoter 2 of 2
Samples (2)
GSM339435 E.ch-p200 HG18 1 of 2
GSM339436 E.ch-p200 HG18 2 of 2
Relations
BioProject PRJNA109989

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13464_RAW.tar 81.2 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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