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Series GSE136102 Query DataSets for GSE136102
Status Public on Aug 22, 2019
Title Profile of new early pregnancy markers identified by transcriptomic analysis in peripheral blood immune cells in beef heifers
Organism Bos indicus
Experiment type Expression profiling by high throughput sequencing
Summary We aimed with this study through RNAseq, found diferentially expressend genes (DEGs) that can be used as a new pregnancy markers in peripheral blood mononuclear cells (PBMC) on day 18 post artificial insemination; and to assess the mRNA profile by RT-qPCR of new pregnancy markers in PBMC and peripheral blood polymorphonuclear cells (PMN) at early pregnancy
Methods: Nelore heifers (N=21) were artificially inseminated in a fixed time (D0). On Day 10, 14, 16, 18 and 20, blood was collected for isolation of PBMC and PMN, and P4 concentration assay and color Doppler ultrasonography was performed to evaluate the corpus luteum (CL) . Pregnancy diagnosis was done on Day 28 and heifers were classified in pregant (N=9) and non-pregant (N=12). Heifers (N=6/group) with different (P<0.05) plasma P4 concentration, CL area and blood perfusion on Day 18 were selected and RNAseq was done on PBMC samples. RNAseq analysis indicated 220 DEGs (200 up regulated in P). Twenty DEGs found on RNAseq of PBMC with the highest fold-changes or no overlapping between pregant and non-pregant, were assessed by RT-qPCR from Day10 to 20 (N=6/group).
Conclusions: nine DEGs studied by RT-qPCR presented increased expression on PBMC for Pregnant group in at least one-time point from Day16 to 20; but only 4 of these DEGs retained the expression increased on PMN (IFI6, IFI44, RSAD2 and LGALS3BP). Thus, results indicate potential genes to be used as novel pregnancy predictors in immune cells in cattle at early gestation.
 
Overall design The PBMC of six pregnant and six non-pregnant Nelore heifers on day 18 after artificial insemination were sequencing by RNAseq
 
Contributor(s) Pugliesi G, da Silva Andrade SC
Citation(s) 32792605
Submission date Aug 21, 2019
Last update date Aug 24, 2020
Contact name cecilia constantino rocha
E-mail(s) cecilia05rocha@gmail.com
Phone 4932465550
Organization name Universidade de São Paulo
Department Animal Reproduction
Lab LFEM
Street address ivan a de souza, 133
City Fraiburgo
State/province SC
ZIP/Postal code 59680-000
Country Brazil
 
Platforms (1)
GPL19746 Illumina HiSeq 2500 (Bos indicus)
Samples (12)
GSM4041138 P-5846
GSM4041139 P-5593
GSM4041140 P-5623
Relations
BioProject PRJNA561299
SRA SRP218974

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136102_DE_PxNP.xlsx 3.1 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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