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Series GSE13620 Query DataSets for GSE13620
Status Public on Nov 18, 2008
Title Genomic hybridization of Col, Van and reciprocal hybrids
Organism Arabidopsis thaliana
Experiment type Genome variation profiling by genome tiling array
Summary Genomic DNA of Col, Van and reciprocal hybrids, bioprime random labeling, and hybridization to AtTILE1 forward array.
Study on genetic ploymorphic between arabidopsis thaliana accessions Col-0 and Van-0, and set the scale of F1 hybrid intensity for SFPs.
 
Overall design Each genotype has four replicates, Single chanel. Total four genotypes (Col, Van, Van female x Col male, Col female x Van male). Total 16 samples.
 
Citation(s) 19025653
Submission date Nov 16, 2008
Last update date Mar 20, 2012
Contact name Justin Borevitz
E-mail(s) borevitz@uchicago.edu
Phone (773)702-5948
URL http://naturalsystems.org/lab
Organization name University of Chicago
Department Ecology and Evolution
Lab Borevitz
Street address 1101 E.57th St.
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL1979 AtTile1F to Arabidopsis Tiling 1.0F
Samples (16)
GSM343172 Col_Seedling_78h_gDNA_rep1
GSM343173 Col_Seedling_78h_gDNA_rep2
GSM343174 Col_Seedling_78h_gDNA_rep3
Relations
BioProject PRJNA110645

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13620_RAW.tar 412.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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