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Series GSE136554 Query DataSets for GSE136554
Status Public on Mar 23, 2021
Title Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications
Organisms Branchiostoma lanceolatum; Danio rerio; Mus musculus
Experiment type Other
Summary 4C-seq experiments to study the evolution of the chromatin architecture of ancient gene regulatory blocks at the origin of vertebrates.
Overall design 4C-seq experiments centered at the promoters of the trans-dev genes involved in gene regulatory blocks in amphioxus plus their paralog genes in mouse and zebrafish.
Contributor(s) Touceda-Suárez M, Kita EM, Acemel RD, Firbas PN, Magri MS, Naranjo S, Tena JJ, Gómez-Skarmeta JL, Maeso I, Irimia M
Citation(s) 32421818
Submission date Aug 28, 2019
Last update date Mar 25, 2021
Contact name Rafael Domínguez Acemel
Organization name Max Delbrück Center for Molecular Medicine (MDC)
Department Berlin Institute of Medical Systems Biology (BIMSB)
Lab AG Lupiañez
Street address Hannoversche Str. 28
City Berlin
State/province Berlin
ZIP/Postal code 10115
Country Germany
Platforms (3)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
GPL20177 Illumina HiSeq 2000 (Branchiostoma lanceolatum)
Samples (12)
GSM4051536 Isl_braLan_15hpf_4C-seq
GSM4051537 Otx_braLan_15hpf_4C-seq
GSM4051538 isl1_danRer_24hpf_4C-seq
BioProject PRJNA562684
SRA SRP219916

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE136554_RAW.tar 11.4 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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