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Series GSE13677 Query DataSets for GSE13677
Status Public on Nov 24, 2009
Title Drosophila pseudoobscura and Drosophila simulans small RNAs
Organisms Drosophila pseudoobscura; Drosophila simulans
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary High-throughput sequencing of Drosophila pseudoobscura and Drosophila simulans small RNAs. ~18-26nt RNAs were isolated from total RNA using PAGE, ligation to adapters requires 5' monophosphate and 3' OH.
 
Overall design Small RNAs were cloned from Drosophila pseudoobscura (heads and pooled 0-12 and 12-24 hour embryos) and Drosophila simulans (pooled 0-12 and 12-24 hour embryos). Sequencing was performed using the Illumina 1G platform. Following removal of 3' linker sequences, the clipped sequences longer than 18 nt were kept.
 
Contributor(s) Berezikov E, Liu N, Flynt AS, Lai EC
Citation(s) 20037610
Submission date Nov 19, 2008
Last update date May 15, 2019
Contact name Eugene Berezikov
E-mail(s) e.berezikov@umcg.nl
Phone +31 50 361 73 00
Organization name University Medical Center Groningen
Department European Research Institute for the Biology of Ageing
Street address Antonius Deusinglaan 1
City Groningen
ZIP/Postal code 9713AV
Country Netherlands
 
Platforms (2)
GPL9394 Illumina Genome Analyzer (Drosophila simulans)
GPL9395 Illumina Genome Analyzer (Drosophila pseudoobscura)
Samples (3)
GSM343915 total small RNAs from embryos (Drosophila simulans)
GSM343916 total small RNAs from embryos (Drosophila pseudoobscura)
GSM444067 total small RNAs from heads (Drosophila pseudoobscura)
Relations
SRA SRP001579
BioProject PRJNA110425

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Raw data are available in SRA

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