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Series GSE13813 Query DataSets for GSE13813
Status Public on Feb 17, 2009
Title 50K SNP Copy Number Analysis of Ovarian Carcinomas
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Genome-wide copy number variation was measured in primary tumours of the ovary, Fallopian tube and peritoneum. A well-defined subset of advanced-stage serous tumors was then used to relate CNV to primary resistance to treatment.

Analysis is described in: Etemadmoghadam, D., et al. (2009). "Integrated genome-wide DNA copy number and expression analysis identifies distinct mechanisms of primary chemoresistance in ovarian carcinomas." Clin Cancer Res 15(4): 1417-27.
Overall design 118 needle-dissected or whole tumours (>80% tumour content) were analysed.
Contributor(s) Etemadmoghadam D, deFazio A, Beroukhim R, Mermel C, George J, Getz G, Tothill R, Okamoto A, Raeder MB, AOCS SG, Harnett P, Lade S, Akslen LA, Tinker AV, Locandro B, Alsop K, Chiew Y, Traficante N, Fereday S, Johnson D, Fox S, Sellers W, Urashima M, Salvesen HB, Meyerson M, Bowtell D
Citation(s) 19193619
Submission date Dec 03, 2008
Last update date Dec 22, 2017
Contact name Dariush Etemadmoghadam
Phone 61396561149
Organization name Peter MacCallum Cancer Centre
Street address St Andrew's Place
City East Melbourne
ZIP/Postal code 3002
Country Australia
Platforms (1)
GPL2005 [Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array
Samples (118)
GSM347470 152_tumour_ovary
GSM347471 153_tumour_ovary
GSM347472 374_tumour_ovary
BioProject PRJNA110585

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE13813_23026_X1_2N.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_23026_X1_2N.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_32048_X1_2N.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_32048_X1_2N.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_70048_X1_2N.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_70048_X1_2N.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_70054_X1_2N.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_70054_X1_2N.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_AFFY_X1.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_AFFY_X1.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_RAW.tar 1.6 Gb (http)(custom) TAR (of CEL, TXT)
GSE13813_REFB1_X1.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB1_X1.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_REFB1_X2.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB1_X2.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_REFB1_X3.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB1_X3.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_REFB2_X1.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB2_X1.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_REFB2_X2.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB2_X2.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_REFB2_X3.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB2_X3.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_REFB2_X4.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB2_X4.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_REFB2_X5.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB2_X5.TXT 1.8 Mb (ftp)(http) TXT
GSE13813_REFB3_X1.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB3_X1.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_REFB4_X3.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB4_X3.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_REFB5_X1.CEL 24.5 Mb (ftp)(http) CEL
GSE13813_REFB5_X1.TXT 1.9 Mb (ftp)(http) TXT
GSE13813_Reference_data.txt 3.8 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

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