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Series GSE138154 Query DataSets for GSE138154
Status Public on Nov 19, 2020
Title EIN3 positive feedback regulation on EIN2C-mediated histone acetylation and gene expression
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis
Summary Purpose: Next-generation sequencing (NGS) has been used to study the gene expression amd EIN2C-EIN3DB binding activity in different samples under air and ethylene treatment. The goal of this study is to uncover how EIN3 dimer affect the EIN2C-mediated histone acethylation and gene expression in response to ethylene.
 
Overall design Whole seedling mRNA profiles of 3-day old EIN2C-EIN3DB/ein3-1eil-1, EIN2C-EIN3DBK245N/ein3-1eil-1 and EIN2CS645A/ein3-1eil-1 were generated by sequencing, and whole seedling ChIP-seq of 3-day old EIN2C-EIN3DB/Col-0, EIN2C-EIN3DB/ein3-1eil-1 were generated by Illumina NextSeq.
Web link https://doi.org/10.1093/plcell/koaa029
 
Contributor(s) Qiao H, Wang L
Citation(s) 33793786
Likai Wang, Zhiyuan Zhang, Fan Zhang, Zhengyao Shao, Bo Zhao, Austin Huang, Jaclyn Tran, Fernando Vera Hernandez, Hong Qiao. EIN2-directed histone acetylation requires EIN3-mediated positive feedback regulation in response to ethylene. The Plant Cell. 2020, koaa029
Submission date Sep 30, 2019
Last update date Jun 03, 2021
Contact name Hong Qiao
Organization name The University of Texas at Austin
Department Department of Molecular Biosciences
Lab Qiao lab
Street address 2506 speedway, NMS5.324
City Austin
State/province TEXAS
ZIP/Postal code 78731
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (16)
GSM4101028 EIN2C-EIN3DB/ein3-1eil-1 4 hour air RNAseq, rep1
GSM4101029 EIN2C-EIN3DB/ein3-1eil-1 4 hour air RNAseq, rep2
GSM4101030 EIN2C-EIN3DBK245N/ein3-1eil-1 4 hour air RNAseq, rep1
Relations
Reanalysis of GSM2051305
Reanalysis of GSM2051306
BioProject PRJNA574938
SRA SRP223696

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138154_CEAvsCEIA_peaks.txt.gz 23.0 Kb (ftp)(http) TXT
GSE138154_CECvsCEIC_peaks.txt.gz 40.3 Kb (ftp)(http) TXT
GSE138154_E2E3Ainein3vsCol_gene_exp.diff.FC2.RPKM1.txt.rmdup.xls.gz 210.5 Kb (ftp)(http) XLS
GSE138154_E2E3ine3A1vsinput_peaks.txt.gz 8.1 Kb (ftp)(http) TXT
GSE138154_E2E3ine3A2vsinput_peaks.txt.gz 8.1 Kb (ftp)(http) TXT
GSE138154_E2E3ine3C1vsinput_peaks.txt.gz 7.5 Kb (ftp)(http) TXT
GSE138154_E2E3ine3C2vsinput_peaks.txt.gz 8.3 Kb (ftp)(http) TXT
GSE138154_E2E3mAinein3.vs.Col_gene_exp.diff.FC2.RPKM1.txt.rmdup.xls.gz 139.2 Kb (ftp)(http) XLS
GSE138154_E2S645Ainein3vsCol_gene_exp.diff.FC2.RPKM1.txt.rmdup.xls.gz 275.6 Kb (ftp)(http) XLS
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Raw data are available in SRA
Processed data are available on Series record

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