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Series GSE138196 Query DataSets for GSE138196
Status Public on Jun 29, 2020
Title Integration of systemic signals in plants
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Transcriptome profiling (RNA-seq) of local and systemic tissue of Arabidopsis Col plants exposed to a local treatment of high light, heat stress and a combination of high light and heat stress on the same leafs or in different leaves
 
Overall design Local leaves of bolting Col plants were exposed to a light intensity of 1700 ┬Ámol m-2 sec-1 using a gooseneck light source (ACE I; Schott), or heat stress by placing a heat block 2 cm underneath the treated leaf, or to the combination of both stresses in the same leaf or in two different leaves for periods of 0, 2 and 8 min. Total RNA of local treated leaves as well as systemic tissue (stem) were used and single-end sequenced reads were obtained from the Illumina NExtSeq platform.
 
Contributor(s) Zandalinas SI, Fichman Y, Devireddy AR, Sengupta S, Azad RK, Mittler R
Citation(s) 32471943
Submission date Sep 30, 2019
Last update date Jun 29, 2020
Contact name Soham Sengupta
Organization name St. Jude Children's Research Hospital
Street address 262 Danny Thomas Place
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (60)
GSM4101585 0min_Local CT_1
GSM4101586 0min_Local CT_2
GSM4101587 0min_Local CT_3
Relations
BioProject PRJNA575019
SRA SRP223758

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE138196_normalized_counts.txt.gz 9.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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