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Series GSE139190 Query DataSets for GSE139190
Status Public on Dec 31, 2020
Title Chromatin status and transcriptomics of HEK293, U2OS, HepG2 and K562
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary RNA-seq, H3K27Ac ChIP-seq, and ATAC-seq data of U2OS, HEK293, HepG2, and K562 cell lines
 
Overall design Two biological replicates for each samples were prepared. Cells were native cells with no treatment.
 
Contributor(s) Tak YE
Citation(s) 34354266
Submission date Oct 21, 2019
Last update date Jan 31, 2022
Contact name Keith Joung
E-mail(s) esther.ygt@gmail.com
Organization name MGH
Street address 149 13th st
City Charlestown
State/province MA
ZIP/Postal code 02129
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (28)
GSM4133277 RNAseq_rep1_U2OS
GSM4133278 RNAseq_rep2_U2OS
GSM4133279 RNAseq_rep1_HEK293
Relations
BioProject PRJNA578731
SRA SRP226501

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139190_RAW.tar 5.5 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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