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Series GSE139417 Query DataSets for GSE139417
Status Public on Nov 25, 2019
Title Functional enhancers shape extrachromosomal oncogene amplifications
Organisms Homo sapiens; synthetic construct
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
Overall design Refer to individual Series
Citation(s) 31761532
Submission date Oct 25, 2019
Last update date Aug 20, 2022
Contact name Peter Scacheri
Organization name Case Western Reserve University
Department Genetics and Genome Sciences
Lab Scacheri Lab
Street address 2109 Adelbert Road
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
Platforms (5)
GPL15520 Illumina MiSeq (Homo sapiens)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17769 Illumina MiSeq (synthetic construct)
Samples (20)
GSM3612679 H3K27ac ChIP-seq 1
GSM3612680 H3K27ac ChIP-seq 2
GSM3612681 H3K27ac ChIP-seq 3
This SuperSeries is composed of the following SubSeries:
GSE126774 Genome-wide maps of active chromatin in Wilms tumor
GSE139414 Chromosome topology of the EGFR locus in glioblastoma
GSE139415 CRISPRi proliferation dropout screen of EGFR cis-regulatory elements
BioProject PRJNA579579

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139417_RAW.tar 1.6 Gb (http)(custom) TAR (of BED, BW, TXT)
SRA Run SelectorHelp

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