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GEO accession:
Series GSE141290
Query DataSets for GSE141290
Status
Public on Sep 14, 2020
Title
Pervasive promoter-proximal regulation in archaea
Organisms
Saccharolobus solfataricus
;
Saccharolobus solfataricus P2
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34535658
,
38388540
Submission date
Dec 02, 2019
Last update date
Mar 07, 2024
Contact name
Finn Werner
Organization name
University College London
Department
Institute of Structural and Molecular Biology
Street address
Gower Street
City
London
ZIP/Postal code
WC1E 6BT
Country
United Kingdom
Platforms (3)
GPL27815
Illumina HiSeq 2500 (Saccharolobus solfataricus)
GPL27828
Illumina HiSeq 4000 (Saccharolobus solfataricus)
GPL28984
Illumina NextSeq 500 (Saccharolobus solfataricus P2)
Samples (84)
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GSM4192700
Rpo47.H2O2.chip-seq.r1
GSM4192701
Rpo47.H2O2.chip-seq.r2
GSM4192702
Spt45.H2O2.chip-seq.r1
GSM4192703
Spt45.H2O2.chip-seq.r2
GSM4192704
Elf1.H2O2.chip-seq.r1
GSM4192705
Elf1.H2O2.chip-seq.r2
GSM4192706
aCPSF1.H2O2.chip-seq.r1
GSM4192707
aCPSF1.H2O2.chip-seq.r2
GSM4192708
TFB.H2O2.chip-seq.r1
GSM4192709
TFB.H2O2.chip-seq.r2
GSM4192710
TFEalpha.H2O2.chip-seq.r1
GSM4192711
TFEalpha.H2O2.chip-seq.r2
GSM4192712
TFEbeta.H2O2.chip-seq.r1
GSM4192713
TFEbeta.H2O2.chip-seq.r2
GSM4192714
input.H2O2.chip-seq.r1
GSM4192715
input.H2O2.chip-seq.r2
GSM4200369
Rpo47.expon.chip-seq.r1
GSM4200370
Rpo47.expon.chip-seq.r2
GSM4200371
Spt45.expon.chip-seq.r1
GSM4200372
Spt45.expon.chip-seq.r2
GSM4200373
Elf1.expon.chip-seq.r1
GSM4200374
Elf1.expon.chip-seq.r2
GSM4200375
aCPSF1.expon.chip-seq.r1
GSM4200376
aCPSF1.expon.chip-seq.r2
GSM4200377
TFB.expon.chip-seq.r1
GSM4200378
TFB.expon.chip-seq.r2
GSM4200379
TFEalpha.expon.chip-seq.r1
GSM4200380
TFEalpha.expon.chip-seq.r2
GSM4200381
TFEbeta.expon.chip-seq.r1
GSM4200382
TFEbeta.expon.chip-seq.r2
GSM4200383
input.expon.chip-seq.r1
GSM4200384
input.expon.chip-seq.r2
GSM4200385
TFEalpha.mock.chip-seq.r1
GSM4200386
TFEalpha.mock.chip-seq.r2
GSM4200387
TFEbeta.mock.chip-seq.r1
GSM4200388
TFEbeta.mock.chip-seq.r2
GSM4200389
input.mock.chip-seq.r1
GSM4200390
input.mock.chip-seq.r2
GSM4200391
Rpo47.H2O2.chip-exo.r1
GSM4200392
Rpo47.H2O2.chip-exo.r2
GSM4200393
Rpo47.H2O2.chip-exo.r3
GSM4200394
TFB.H2O2.chip-exo.r1
GSM4200395
TFB.H2O2.chip-exo.r2
GSM4200396
TFB.H2O2.chip-exo.r3
GSM4200397
Rpo47.expon.chip-exo.r1
GSM4200398
Rpo47.expon.chip-exo.r2
GSM4200399
Rpo47.expon.chip-exo.r3
GSM4200400
TFB.expon.chip-exo.r1
GSM4200401
TFB.expon.chip-exo.r2
GSM4200402
TFB.expon.chip-exo.r3
GSM4200403
TFEbeta.expon.chip-exo.r1
GSM4200404
TFEbeta.expon.chip-exo.r2
GSM4200405
TFEbeta.expon.chip-exo.r3
GSM4201856
RNA-seq.H2O2.r1
GSM4201857
RNA-seq.H2O2.r2
GSM4201858
RNA-seq.mock.r1
GSM4201859
RNA-seq.mock.r2
GSM4201860
Rpo47.expon.permanganate.ChIP-seq.r1
GSM4201861
Rpo47.expon.permanganate.ChIP-seq.r2
GSM4201862
TFB.expon.permanganate.ChIP-seq.r1
GSM4201863
TFB.expon.permanganate.ChIP-seq.r2
GSM4203662
RNA-seq.expon.r1
GSM4203663
RNA-seq.expon.r2
GSM4203664
Rpo47.H2O2.permanganate.ChIP-seq.r1
GSM4203665
Rpo47.H2O2.permanganate.ChIP-seq.r2
GSM4203666
TFB.H2O2.permanganate.ChIP-seq.r1
GSM4203667
TFB.H2O2.permanganate.ChIP-seq.r2
GSM4209584
Rpo47.stat.chip-seq.r1
GSM4209585
Rpo47.stat.chip-seq.r2
GSM4209586
Spt45.stat.chip-seq.r1
GSM4209587
Spt45.stat.chip-seq.r2
GSM4209588
TFB.stat.chip-seq.r1
GSM4209589
TFB.stat.chip-seq.r2
GSM4209590
TFEalpha.stat.chip-seq.r1
GSM4209591
TFEalpha.stat.chip-seq.r2
GSM4209592
TFEbeta.stat.chip-seq.r1
GSM4209593
TFEbeta.stat.chip-seq.r2
GSM4209594
input.stat.chip-seq.r1
GSM4209595
input.stat.chip-seq.r2
GSM4715015
Cappable _sRNA-seq.expon.r1
GSM4715016
Cappable _sRNA-seq.expon.r2
GSM4728364
RNA-seq.stat.r1
GSM4728365
RNA-seq.stat.r2
GSM4728366
RNA-seq.stat.r3
This SuperSeries is composed of the following SubSeries:
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GSE141033
Pervasive promoter-proximal regulation in archaea: ChIP-seq hydrogen peroxide-treated cells
GSE141286
Pervasive promoter-proximal regulation in archaea: ChIP-seq exponential growth
GSE141287
Pervasive promoter-proximal regulation in archaea: ChIP-seq mock-treated cells
GSE141288
Pervasive promoter-proximal regulation in archaea: ChIP-exo hydrogen peroxide-treated cells
GSE141289
Pervasive promoter-proximal regulation in archaea: ChIP-exo exponential growth
GSE141357
Pervasive promoter-proximal regulation in archaea: RNA-seq of hydrogen peroxide-treated cells and mock-treated control
GSE141358
Pervasive promoter-proximal regulation in archaea: Permanganate ChIP-seq exponential growth
GSE141461
Pervasive promoter-proximal regulation in archaea: RNA-seq of cells during exponential growth
GSE141462
Pervasive promoter-proximal regulation in archaea: Permanganate ChIP-seq hydrogen-peroxide treated cells
GSE141617
Pervasive promoter-proximal regulation in archaea: ChIP-seq stationary phase
GSE155876
Pervasive promoter-proximal regulation in archaea: RNA-seq of cells during exponential growth (Cappable _sRNA-seq)
GSE156286
Pervasive promoter-proximal regulation in archaea: RNA-seq of cells during stationary phase
Relations
BioProject
PRJNA593004
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Format
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GSE141290_RAW.tar
1.8 Gb
(http)
(custom)
TAR (of BAM, BW)
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