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Series GSE141893 Query DataSets for GSE141893
Status Public on Sep 01, 2020
Title Florigen family chromatin recruitment, competition and targets [RNA-Seq]
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary This study identified genes that re-upregulated in far-red enriched photoperiod in the wild type or tfl1-1, but not in ft-10 (FT-dependent photoinduction). We performed RNA seq on tfl1-1, wild type and ft-10 grown for 42 days in short-day conditions and treated for 24 hours with far-red enriched photoinduction (24 hr FRP) or grown for 43 days in short-day conditions (no FRP). RNA was isolated from trimmed and dissected non-bolted inflorescences.
 
Overall design We sequenced three biological replicates per genotype and treatment and analyzed two biological replicates per condition for differential expression.
 
Contributor(s) Klasfeld S, Zhu Y, Wagner D
Citation(s) 33046692
Submission date Dec 12, 2019
Last update date Oct 06, 2021
Contact name Doris Wagner
E-mail(s) wagnerdo@sas.upenn.edu
Phone 2158980483
Organization name University of Pennsylvania
Department Department of Biology
Lab Wagner Lab
Street address 103G Carolyn Lynch Laboratory
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (18)
GSM4215588 Shoot apices, ft 0hr FRP Rep1 RNA-Seq
GSM4215589 Shoot apices, ft 0hr FRP Rep2 RNA-Seq
GSM4215590 Shoot apices, ft 0hr FRP Rep3 RNA-Seq
This SubSeries is part of SuperSeries:
GSE141894 Florigen family chromatin recruitment, competition and targets
Relations
BioProject PRJNA595115
SRA SRP237325

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE141893_RAW.tar 2.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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