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| Status |
Public on Apr 30, 2023 |
| Title |
Multiple paths of plant host toxicity are associated with the fungal toxin cercosporin |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Effect of various Cercosporin concentrations on gene expression in Arabidopsis
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| Overall design |
Total RNA obtained from 2-week old WT (Col-0) Arabidopsis seedlings incubated with various concentrations of cercosporin before exposure to light (30 µE) for 30min
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| Contributor(s) |
Koh E, Fluhr R |
| Citation(s) |
37212197 |
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| Submission date |
Jan 03, 2020 |
| Last update date |
Aug 21, 2023 |
| Contact name |
Eugene Koh |
| E-mail(s) |
eugenekohros@gmail.com
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| Organization name |
Temasek Life Sciences Laboratories
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| Lab |
Chua Lab
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| Street address |
1 Research Link
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| City |
Singapore |
| ZIP/Postal code |
117604 |
| Country |
Singapore |
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| Platforms (1) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
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| Samples (15)
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| GSM4247423 |
Cerco 0.1 µM, rep1 |
| GSM4247424 |
Cerco 0.1 µM, rep2 |
| GSM4247425 |
Cerco 0.1 µM, rep3 |
| GSM4247426 |
Cerco 1 µM, rep1 |
| GSM4247427 |
Cerco 1 µM, rep2 |
| GSM4247428 |
Cerco 1 µM, rep3 |
| GSM4247429 |
Cerco 10 µM, rep1 |
| GSM4247430 |
Cerco 10 µM, rep2 |
| GSM4247431 |
Cerco 10 µM, rep3 |
| GSM4247432 |
Cerco 100 µM, rep1 |
| GSM4247433 |
Cerco 100 µM, rep2 |
| GSM4247434 |
Cerco 100 µM, rep3 |
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| Relations |
| BioProject |
PRJNA598828 |
| SRA |
SRP239384 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE142976_Deseq_raw_norm_no_UMI_filter_Cerco1f.txt.gz |
7.2 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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