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Series GSE143413 Query DataSets for GSE143413
Status Public on Jun 16, 2021
Title High-depth spatial transcriptome analysis by photo-isolation chemistry
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We established a transcriptome profiling method coupled with photo-isolation chemistry (PIC) that allows the determination of expression profiles specifically from photo-irradiated regions of interest.
Overall design We performed PIC to isolate expression profiles from small domain of the E14.5 mouse neural tube. We performed PIC to isolate expression profiles from small domain of HeLa cells or NIH3T3 cells. We performed PIC to isolate expression profiles from each of the major hippocmpal [CA1, CA2 and dentate gyrus (DG) ] in 8 weeks male mice.
Contributor(s) Honda M, Oki S, Kimura R, Harada A, Maehara K, Tanaka K, Meno C, Ohkawa Y
Citation(s) 34285220
Submission date Jan 10, 2020
Last update date Jul 28, 2021
Contact name Shinya Oki
Organization name Kyoto University
Street address 53 Kawahara-cho, Shogoin
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platforms (2)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
GPL18480 Illumina HiSeq 1500 (Mus musculus)
Samples (45)
GSM4258759 None photo-irradiation replicate 1 [None-1]
GSM4258760 None photo-irradiation replicate 2 [None-2]
GSM4258761 None photo-irradiation replicate 3 [None-3]
BioProject PRJNA600404
SRA SRP241151

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SOFT formatted family file(s) SOFTHelp
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Supplementary file Size Download File type/resource
GSE143413_UMI_count_Hippo_PIC.csv.gz 288.4 Kb (ftp)(http) CSV
GSE143413_UMI_count_Low_input.csv.gz 485.6 Kb (ftp)(http) CSV
GSE143413_UMI_count_NucSpeckle.csv.gz 239.3 Kb (ftp)(http) CSV
GSE143413_UMI_count_StressGranule.csv.gz 214.1 Kb (ftp)(http) CSV
GSE143413_UMI_rawCount.csv.gz 766.0 Kb (ftp)(http) CSV
GSE143413_cell_barcode_Hippocampus_sample.csv.gz 146 b (ftp)(http) CSV
GSE143413_cell_barcode_sample.csv.gz 330 b (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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