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Series GSE144674 Query DataSets for GSE144674
Status Public on Mar 30, 2020
Title half_edit - A new predictive method for E+ PPR binding
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary ngs2018_04_half_edit-half_edit - Is there some transcriptomic defects in these different PPR KO mutants? - Identification of RNA editing defects in 3 differents KO mutants for E+ PPR. Results will be compared to different predictive methods in order to find out which one is the more accurate. Also looking for other transcriptomic defects in a pure-PPR.
 
Overall design 15 samples with 1 biological replicate. normal vs transgenic comparison
Web link http://tools.ips2.u-psud.fr/CATdb
 
Contributor(s) Alaunay A, Delannoy E, Taconnat-Soubigou L
Citation(s) 32098170
Submission date Feb 03, 2020
Last update date Mar 30, 2020
Contact name VĂ©ronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (15)
GSM4293394 Col_1
GSM4293395 Col_2
GSM4293396 Col_3
Relations
BioProject PRJNA604567
SRA SRP246871

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144674_RAW.tar 19.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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