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Series GSE144795 Query DataSets for GSE144795
Status Public on May 08, 2020
Title The serotonin neurotransmitter modulates virulence of enteric pathogens
Organism Escherichia coli
Experiment type Expression profiling by high throughput sequencing
Summary RNA seq experiment was perfomed in the presence and absence of 10µM serotonin
Overall design EHEC strain 86 24 was used for this study. WT EHEC were grown until late log phase in low gluocse DMEM in the presence and absence of 10µM serotonin. RNA was extracted from these samples. The experiment was conducted with three biological replicates.
Contributor(s) Kumar A, Sperandio V
Citation(s) 32521224
Submission date Feb 05, 2020
Last update date Feb 28, 2023
Contact name Aman Kumar
Organization name UT Southwestern Medical Center
Department Microbiology
Street address 5323 Harry Hines Blvd.
City Dallas
State/province Texas
ZIP/Postal code 75390-9048
Country USA
Platforms (1)
GPL21222 Illumina NextSeq 500 (Escherichia coli)
Samples (2)
GSM4296512 WT EHEC
GSM4296513 WT EHEC with 10µM serotonin
BioProject PRJNA604962
SRA SRP247364

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144795_serotonin-all-genes.xlsx 298.1 Kb (ftp)(http) XLSX
GSE144795_serotonin_EHEC.astar.gz 5.7 Mb (ftp)(http) ASTAR
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Raw data are available in SRA
Processed data are available on Series record

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