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Series GSE144849 Query DataSets for GSE144849
Status Public on Dec 31, 2020
Title Transcriptome analysis for comparing the overlap mis-regulated genes between impα triple and lhp1-3 mutants.
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We performed transcriptomic analysis to check the overlap mis-regulated genes between impα triple and lhp1 mutants. Overall, 87.64% genes differentially expressed in lhp1-3 are also differentially expressed in impα triple. We also observed that the number of DEGs in impα triple mutants are greater than that in lhp1-3 mutants, which is expected given that IMPα 1, 2 and 3 should also be necessary for other nucleus-localized proteins.
 
Overall design Comparision of differently expressed genes in impα triple and lhp1-3 mutants
 
Contributor(s) Yogendra  B, Bo Z
Citation(s) 32365248
Submission date Feb 06, 2020
Last update date Apr 01, 2021
Contact name Sibum Sung
E-mail(s) sbsung@austin.utexas.edu
Organization name University of Texas at Austin
Street address NMS 5.110, Stop A5000
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (6)
GSM4299196 Col-0 RNA-seq [Col1]
GSM4299197 Col-0 RNA-seq [Col2]
GSM4299198 lhp1-3 RNA-seq [lhp1]
Relations
BioProject PRJNA605148
SRA SRP247505

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE144849_Raw_count_and_RPKM_normalized_data.xlsx 4.7 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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