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Series GSE144849 Query DataSets for GSE144849
Status Public on Dec 31, 2020
Title Transcriptome analysis for comparing the overlap mis-regulated genes between impα triple and lhp1-3 mutants.
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary We performed transcriptomic analysis to check the overlap mis-regulated genes between impα triple and lhp1 mutants. Overall, 87.64% genes differentially expressed in lhp1-3 are also differentially expressed in impα triple. We also observed that the number of DEGs in impα triple mutants are greater than that in lhp1-3 mutants, which is expected given that IMPα 1, 2 and 3 should also be necessary for other nucleus-localized proteins.
Overall design Comparision of differently expressed genes in impα triple and lhp1-3 mutants
Contributor(s) Yogendra  B, Bo Z
Citation(s) 32365248
Submission date Feb 06, 2020
Last update date Apr 01, 2021
Contact name Sibum Sung
Organization name University of Texas at Austin
Street address NMS 5.110, Stop A5000
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (6)
GSM4299196 Col-0 RNA-seq [Col1]
GSM4299197 Col-0 RNA-seq [Col2]
GSM4299198 lhp1-3 RNA-seq [lhp1]
BioProject PRJNA605148
SRA SRP247505

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Supplementary file Size Download File type/resource
GSE144849_Raw_count_and_RPKM_normalized_data.xlsx 4.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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