|
| Status |
Public on Jan 24, 2009 |
| Title |
Identification of transcription factor Pha-4 binding regions |
| Project |
modENCODE
|
| Organism |
Caenorhabditis elegans |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
We identified the DNA binding sites for transcription factors Pha-4 in C. elegans. Transcription factor genes were tagged with GFP and their expression examined throughout the C. elegans life cycle. The binding sites were determined using chromatin immunoprecipitation with anti-GFP antibody followed by illumina high-throughput sequencing (ChIP-seq).
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| |
|
| Overall design |
Two growth stages of pha-4 transgenic worm were studied including embryo and starved L1.
|
| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
|
| |
|
| Contributor(s) |
Zhong M |
| Citation(s) |
21177963 |
| BioProject |
PRJNA63461 |
| |
| Submission date |
Jan 23, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Flora Vaccarino |
| Organization name |
Yale University
|
| Department |
Child Study Center
|
| Lab |
Vaccarino
|
| Street address |
230 South Frontage Road
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9309 |
Illumina Genome Analyzer (Caenorhabditis elegans) |
|
| Samples (4)
|
|
| Relations |
| SRA |
SRP000603 |
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