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Series GSE146511 Query DataSets for GSE146511
Status Public on Mar 05, 2021
Title Functional characterization of RNF219
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary In this study, we analyzed the function of RNF219 in gene expression control by RNA-Seq analyses in mouse embryonic stem cells after RNF219 knockdown.
 
Overall design ES cells were infected with lentivirus carrying either non-targeting shRNA or Cnot10 shRNA. 2 replicates each.
 
Contributor(s) Lin C
Citation(s) 33104214
Submission date Mar 06, 2020
Last update date Nov 29, 2022
Contact name Xiaoxu Liu
E-mail(s) liuxiaoxu1010@126.com
Organization name Southeast University
Department Institute of Life Sciences
Lab the Key Laboratory of Developmental Genes and Human Disease
Street address 2 Sipailou
City Nanjing
State/province Jiangsu
ZIP/Postal code 210018
Country China
 
Platforms (2)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL21273 HiSeq X Ten (Mus musculus)
Samples (12)
GSM4388123 RNA-seq of mES total RNA after non-targeting shRNA replicate 1
GSM4388124 RNA-seq of mES total RNA after non-targeting shRNA replicate 2
GSM4388125 RNA-seq of mES total RNA after Cnot10 shRNA replicate 1
Relations
BioProject PRJNA610788
SRA SRP251834

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE146511_ES_Cnot10.xlsx 145.1 Kb (ftp)(http) XLSX
GSE146511_ES_Rnf219.sh50.xlsx 607.4 Kb (ftp)(http) XLSX
GSE146511_RAW.tar 1.7 Gb (http)(custom) TAR (of BW)
GSE146511_SHC_vs_shRnf219.txt.gz 145.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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