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Series GSE146611 Query DataSets for GSE146611
Status Public on Mar 31, 2020
Title The histone variant H2A.Z is required to establish normal patterns of H3K27 methylation in Neurospora crassa
Organism Neurospora crassa
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary H2A.Z regulates H3K27 methylation via eed expression
Overall design Mycelial cultures collected at 12, 18, 24 hours. Cells lysed and subjected to RNA extraction or chromatin immunoprecipitation. 54 total samples, replicates vary by sample.
Contributor(s) Courtney AJ, Kamei M, Ferraro AR, Gai K, He Q, Honda S, Lewis ZA
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 08, 2020
Last update date Apr 02, 2020
Contact name Zachary A Lewis
Organization name University of Georgia
Department Microbiology
Lab Lewis
Street address 1000 Cedar St. Biosciences Bldg
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
Platforms (1)
GPL20660 Illumina NextSeq 500 (Neurospora crassa)
Samples (54)
GSM4399498 Wild type RNA-seq rep 1
GSM4399499 Wild type RNA-seq rep 2
GSM4399500 Wild type RNA-seq rep 3
BioProject PRJNA611087
SRA SRP251988

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE146611_NC_Run104.countsNoName.txt.gz 506.2 Kb (ftp)(http) TXT
GSE146611_RAW.tar 163.0 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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